Research workbench
AlphaFold monomer V2.0 prediction for U1 small nuclear ribonucleoprotein a (Q06AA4)
Analyse AlphaFold monomer V2.0 prediction for U1 small nuclear ribonucleoprotein a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q06AA4
- Type
- protein
- Length
- 282 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- U1 small nuclear ribonucleoprotein a
- UniProt
- Q06AA4
- Pockets
- 2 · best druggability 0.45
Structure
1 distinct chain · 19% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U1 small nuclear ribonucleoprotein a | protein | 282 | 19% helix, 18% strand | Q06AA4 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.45 | 0.83 | 13 | empty |
| 2 | 73 | 0.31 | 0.74 | 18 | empty |
Compared structures
- 4PKD · U1-70k in complex with U1 snRNA stem-loops 1 and U1-A RRM in complex with stem-loop 2 · an experimental structure of the same protein · chain A against B, TM-score 0.35
- 4PKD · U1-70K in complex with U1 snrna stem-loops 1 and U1-a rrm in complex with stem-loop 2 · an experimental structure of the same protein · chain A against B, TM-score 0.35
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06AA4
- Elsewhere: UniProt Q06AA4 · AlphaFold DB Q06AA4
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