Research workbench
AlphaFold monomer V2.0 prediction for histone-lysine N-methyltransferase SMYD1 (Q8NB12)
Analyse AlphaFold monomer V2.0 prediction for histone-lysine N-methyltransferase SMYD1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8NB12
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- Histone-lysine N-methyltransferase SMYD1
- UniProt
- Q8NB12
- Pockets
- 4 · best druggability 0.84
Structure
1 distinct chain · 50% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone-lysine N-methyltransferase SMYD1 | protein | 490 | 50% helix, 12% strand | Q8NB12 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1149 | 0.84 | 0.84 | 111 | empty |
| 2 | 351 | 0.66 | 0.81 | 40 | empty |
| 3 | 174 | 0.61 | 0.83 | 25 | empty |
| 4 | 57 | 0.46 | 0.84 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NB12
- Elsewhere: UniProt Q8NB12 · AlphaFold DB Q8NB12
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.