Research workbench
AlphaFold monomer V2.0 prediction for protein SMG8 (B4P0U1)
Analyse AlphaFold monomer V2.0 prediction for protein SMG8 (B4P0U1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B4P0U1
- Type
- protein
- Length
- 950 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4a10f01615cd3ebD6464279A1A963c3D08465c80
- Molecule
- Protein SMG8
- UniProt
- B4P0U1
- Pockets
- 10 · best druggability 0.68
Structure
1 distinct chain · 30% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SMG8 | protein | 950 | 30% helix, 17% strand | B4P0U1 |
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 583 | 0.68 | 0.78 | 63 | empty |
| 2 | 298 | 0.64 | 0.81 | 40 | empty |
| 3 | 177 | 0.51 | 0.77 | 22 | empty |
| 4 | 194 | 0.46 | 0.75 | 36 | empty |
| 5 | 100 | 0.45 | 0.79 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4P0U1
- Elsewhere: UniProt B4P0U1 · AlphaFold DB B4P0U1
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