Research workbench
AlphaFold monomer V2.0 prediction for protein SMG8 (B4HWV2)
Analyse AlphaFold monomer V2.0 prediction for protein SMG8 (B4HWV2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B4HWV2
- Type
- protein
- Length
- 927 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x29079336903c8b941FeC32FB7511f5984fDd7f0c
- Molecule
- Protein SMG8
- UniProt
- B4HWV2
- Pockets
- 14 · best druggability 0.68
Structure
1 distinct chain · 29% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SMG8 | protein | 927 | 29% helix, 16% strand | B4HWV2 |
Pockets
14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.68 | 0.92 | 23 | empty |
| 2 | 322 | 0.60 | 0.78 | 49 | empty |
| 3 | 349 | 0.58 | 0.76 | 35 | empty |
| 4 | 76 | 0.50 | 0.84 | 23 | empty |
| 5 | 239 | 0.48 | 0.74 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4HWV2
- Elsewhere: UniProt B4HWV2 · AlphaFold DB B4HWV2
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