Research workbench
AlphaFold monomer V2.0 prediction for protein SMG8 (B3N538)
Analyse AlphaFold monomer V2.0 prediction for protein SMG8 (B3N538) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B3N538
- Type
- protein
- Length
- 949 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Protein SMG8
- UniProt
- B3N538
- Pockets
- 10 · best druggability 0.59
Structure
1 distinct chain · 30% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SMG8 | protein | 949 | 30% helix, 17% strand | B3N538 |
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 340 | 0.59 | 0.77 | 44 | empty |
| 2 | 165 | 0.54 | 0.80 | 19 | empty |
| 3 | 169 | 0.47 | 0.76 | 18 | empty |
| 4 | 113 | 0.43 | 0.78 | 22 | empty |
| 5 | 102 | 0.37 | 0.75 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3N538
- Elsewhere: UniProt B3N538 · AlphaFold DB B3N538
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