Research workbench
AlphaFold monomer V2.0 prediction for protein SMG8 (B0W730)
Analyse AlphaFold monomer V2.0 prediction for protein SMG8 (B0W730) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0W730
- Type
- protein
- Length
- 912 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x362a6d063b1B7E1B6EfD3A9A7CA3612e3FE037AA
- Molecule
- Protein SMG8
- UniProt
- B0W730
- Pockets
- 11 · best druggability 0.68
Structure
1 distinct chain · 31% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SMG8 | protein | 912 | 31% helix, 17% strand | B0W730 |
Pockets
11 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 661 | 0.68 | 0.76 | 62 | empty |
| 2 | 85 | 0.41 | 0.79 | 18 | empty |
| 3 | 63 | 0.40 | 0.80 | 19 | empty |
| 4 | 129 | 0.40 | 0.75 | 25 | empty |
| 5 | 85 | 0.38 | 0.77 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0W730
- Elsewhere: UniProt B0W730 · AlphaFold DB B0W730
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