Research workbench
AlphaFold monomer V2.0 prediction for chromosome partition protein smc (P51834)
Analyse AlphaFold monomer V2.0 prediction for chromosome partition protein smc (P51834) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P51834
- Type
- protein
- Length
- 1,186 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Chromosome partition protein smc
- UniProt
- P51834
- Pockets
- 7 · best druggability 0.52
Structure
1 distinct chain · 67% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromosome partition protein smc | protein | 1186 | 67% helix, 10% strand | P51834 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.52 | 0.82 | 25 | empty |
| 2 | 74 | 0.48 | 0.83 | 20 | empty |
| 3 | 139 | 0.46 | 0.77 | 28 | empty |
| 4 | 152 | 0.42 | 0.74 | 21 | empty |
| 5 | 85 | 0.38 | 0.77 | 12 | empty |
Compared structures
- 5XG3 · Crystal structure of the atpgs-engaged smc head domain with an extended coiled coil bound… · an experimental structure of the same protein · chain A against B, TM-score 0.29
- 3ZGX · Crystal structure of the kleisin-N SMC interface in prokaryotic condensin · an experimental structure of the same protein · chain A against B, TM-score 0.25
- 3ZGX · Crystal structure of the kleisin-N smc interface in prokaryotic condensin · an experimental structure of the same protein · chain A against B, TM-score 0.25
- 5NNV · Structure of a Bacillus subtilis Smc coiled coil middle fragment · an experimental structure of the same protein · chain A against D, TM-score 0.18
- 5NNV · Structure of a bacillus subtilis smc coiled coil middle fragment · an experimental structure of the same protein · chain A against D, TM-score 0.18
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51834
- Elsewhere: UniProt P51834 · AlphaFold DB P51834
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.