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AlphaFold monomer V2.0 prediction for scm-like with four mbt domains protein 2 (Q5VUG0)

Analyse AlphaFold monomer V2.0 prediction for scm-like with four mbt domains protein 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q5VUG0
Type: protein
Length: 894 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
Molecule: Scm-like with four mbt domains protein 2
UniProt: Q5VUG0
Pockets: 10 · best druggability 0.79

Structure

1 distinct chain · 23% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Scm-like with four mbt domains protein 2	protein	894	23% helix, 19% strand	Q5VUG0

Pockets

10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	804	0.79	0.82	64	empty
2	786	0.73	0.78	62	empty
3	339	0.57	0.76	36	empty
4	90	0.37	0.76	16	empty
5	67	0.36	0.78	14	empty

Compared structures

1WJR · Solution structure of the 2nd mbt domain from human KIAA1617 protein · an experimental structure of the same protein · chain A against A, TM-score 0.13
1WJR · Solution structure of the 2ND mbt domain from human KIAA1617 protein · an experimental structure of the same protein · chain A against A, TM-score 0.13

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5VUG0
Elsewhere: UniProt Q5VUG0 · AlphaFold DB Q5VUG0

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