Research workbench
AlphaFold monomer V2.0 prediction for 34 kda spicule matrix protein (Q05904)
Analyse AlphaFold monomer V2.0 prediction for 34 kda spicule matrix protein (Q05904) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q05904
- Type
- protein
- Length
- 335 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x71112d4fF7ebb3b617963c05f052289e073082FD
- Molecule
- 34 kda spicule matrix protein
- UniProt
- Q05904
- Pockets
- 4 · best druggability 0.68
Structure
1 distinct chain · 12% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 34 kda spicule matrix protein | protein | 335 | 12% helix, 12% strand | Q05904 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 512 | 0.68 | 0.79 | 47 | empty |
| 2 | 262 | 0.59 | 0.78 | 36 | empty |
| 3 | 194 | 0.44 | 0.73 | 25 | empty |
| 4 | 88 | 0.33 | 0.74 | 23 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05904
- Elsewhere: UniProt Q05904 · AlphaFold DB Q05904
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