Research workbench
AlphaFold monomer V2.0 prediction for secologanin synthase (U5NDT8)
Analyse AlphaFold monomer V2.0 prediction for secologanin synthase (U5NDT8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- U5NDT8
- Type
- protein
- Length
- 527 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4DFa4212bcA4e8C4A6FaABF30918b7cc4486C3Db
- Molecule
- Secologanin synthase
- UniProt
- U5NDT8
- Pockets
- 5 · best druggability 0.88
Structure
1 distinct chain · 61% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Secologanin synthase | protein | 527 | 61% helix, 10% strand | U5NDT8 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 921 | 0.88 | 0.90 | 70 | empty |
| 2 | 117 | 0.51 | 0.81 | 26 | empty |
| 3 | 88 | 0.36 | 0.75 | 13 | empty |
| 4 | 76 | 0.34 | 0.75 | 14 | empty |
| 5 | 74 | 0.32 | 0.74 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U5NDT8
- Elsewhere: UniProt U5NDT8 · AlphaFold DB U5NDT8
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