Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor SIGI8 (A3DJP3)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor SIGI8 (A3DJP3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A3DJP3
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x815842391E89cADd7ff90b82BCE858dd25E196a6
- Molecule
- RNA polymerase sigma factor SIGI8
- UniProt
- A3DJP3
- Pockets
- 5 · best druggability 0.63
Structure
1 distinct chain · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor SIGI8 | protein | 254 | 69% helix, 0% strand | A3DJP3 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 390 | 0.63 | 0.78 | 32 | empty |
| 2 | 210 | 0.52 | 0.76 | 21 | empty |
| 3 | 169 | 0.50 | 0.77 | 21 | empty |
| 4 | 95 | 0.46 | 0.80 | 13 | empty |
| 5 | 180 | 0.43 | 0.73 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3DJP3
- Elsewhere: UniProt A3DJP3 · AlphaFold DB A3DJP3
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