Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor siga (Q04506)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor siga (Q04506) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q04506
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDC743587FCBF7fa9934EA80Fa8ee6DB1899C6b27
- Molecule
- RNA polymerase sigma factor siga
- UniProt
- Q04506
- Pockets
- 4 · best druggability 0.72
Structure
1 distinct chain · 65% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor siga | protein | 386 | 65% helix, 2% strand | Q04506 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 738 | 0.72 | 0.78 | 67 | empty |
| 2 | 219 | 0.61 | 0.81 | 30 | empty |
| 3 | 134 | 0.42 | 0.74 | 16 | empty |
| 4 | 66 | 0.33 | 0.75 | 11 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04506
- Elsewhere: UniProt Q04506 · AlphaFold DB Q04506
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