Research workbench
AlphaFold monomer V2.0 prediction for seed lectin (U3KRF8)
Analyse AlphaFold monomer V2.0 prediction for seed lectin (U3KRF8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- U3KRF8
- Type
- protein
- Length
- 519 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf7FB783782B285Db3199EbD0D87C7bB413D7D508
- Molecule
- Seed lectin
- UniProt
- U3KRF8
- Pockets
- 5 · best druggability 0.76
Structure
1 distinct chain · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Seed lectin | protein | 519 | 28% helix, 33% strand | U3KRF8 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.76 | 0.98 | 22 | empty |
| 2 | 280 | 0.58 | 0.78 | 31 | empty |
| 3 | 231 | 0.57 | 0.79 | 31 | empty |
| 4 | 97 | 0.42 | 0.78 | 20 | empty |
| 5 | 56 | 0.29 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 5Y42 · Native-crystal structure of three chain non-toxic type II ribosome inactivating protein… · an experimental structure of the same protein · chain A against C, TM-score 0.51
- 5Y42 · Native-crystal structure of three chain non-toxic type II ribosome inactivating protein… · an experimental structure of the same protein · chain A against C, TM-score 0.51
- 5Y97 · Crystal structure of snake gourd seed lectin in complex with lactose · an experimental structure of the same protein · chain A against C, TM-score 0.51
- 5Y97 · Crystal structure of snake gourd seed lectin in complex with lactose · an experimental structure of the same protein · chain A against C, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U3KRF8
- Elsewhere: UniProt U3KRF8 · AlphaFold DB U3KRF8
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