Research workbench
AlphaFold monomer V2.0 prediction for sphingomyelinase phosphodiesterase C (Q54SR8)
Analyse AlphaFold monomer V2.0 prediction for sphingomyelinase phosphodiesterase C… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q54SR8
- Type
- protein
- Length
- 446 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Sphingomyelinase phosphodiesterase C
- UniProt
- Q54SR8
- Pockets
- 2 · best druggability 0.58
Structure
1 distinct chain · 38% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sphingomyelinase phosphodiesterase C | protein | 446 | 38% helix, 17% strand | Q54SR8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 185 | 0.58 | 0.81 | 23 | empty |
| 2 | 138 | 0.49 | 0.79 | 29 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q54SR8
- Elsewhere: UniProt Q54SR8 · AlphaFold DB Q54SR8
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