Research workbench
AlphaFold monomer V2.0 prediction for semaphorin-5B (Q9P283)
Analyse AlphaFold monomer V2.0 prediction for semaphorin-5B (Q9P283) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9P283
- Type
- protein
- Length
- 1,151 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7EBA66f42a134ed5D9894Eb790da5698bF825Df0
- Molecule
- Semaphorin-5B
- UniProt
- Q9P283
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 8% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Semaphorin-5B | protein | 1151 | 8% helix, 28% strand | Q9P283 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 862 | 0.75 | 0.79 | 66 | empty |
| 2 | 422 | 0.58 | 0.74 | 43 | empty |
| 3 | 110 | 0.41 | 0.76 | 20 | empty |
| 4 | 117 | 0.39 | 0.75 | 28 | empty |
| 5 | 59 | 0.34 | 0.77 | 20 | empty |
Modifications
Observed in the structure: 25 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P283
- Elsewhere: UniProt Q9P283 · AlphaFold DB Q9P283
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