Research workbench
AlphaFold monomer V2.0 prediction for semaphorin-3D (Q90663)
Analyse AlphaFold monomer V2.0 prediction for semaphorin-3D (Q90663) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q90663
- Type
- protein
- Length
- 761 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x69bd3d8B33871a491e7265723C8BA854444ae3eb
- Molecule
- Semaphorin-3D
- UniProt
- Q90663
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 15% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Semaphorin-3D | protein | 761 | 15% helix, 34% strand | Q90663 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 799 | 0.75 | 0.80 | 62 | empty |
| 2 | 241 | 0.59 | 0.80 | 34 | empty |
| 3 | 80 | 0.49 | 0.83 | 15 | empty |
| 4 | 131 | 0.42 | 0.75 | 20 | empty |
| 5 | 93 | 0.38 | 0.76 | 15 | empty |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q90663
- Elsewhere: UniProt Q90663 · AlphaFold DB Q90663
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