Research workbench
AlphaFold monomer V2.0 prediction for secretagogin (Q91WD9)
Analyse AlphaFold monomer V2.0 prediction for secretagogin (Q91WD9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q91WD9
- Type
- protein
- Length
- 276 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9073C46348542FfE4327c3F363F9B51B22058e75
- Molecule
- Secretagogin
- UniProt
- Q91WD9
- Pockets
- 3 · best druggability 0.54
Structure
1 distinct chain · 59% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Secretagogin | protein | 276 | 59% helix, 7% strand | Q91WD9 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 280 | 0.54 | 0.76 | 31 | empty |
| 2 | 184 | 0.53 | 0.78 | 16 | empty |
| 3 | 53 | 0.34 | 0.78 | 13 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 8BAN · Secretagogin (mouse) in complex with its target peptide from SNAP-25 · an experimental structure of the same protein · chain A against D, TM-score 0.68
- 8BBJ · Secretagogin (mouse) in complex with its target peptide from Syntaxin-4 · an experimental structure of the same protein · chain A against D, TM-score 0.60
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91WD9
- Elsewhere: UniProt Q91WD9 · AlphaFold DB Q91WD9
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