Research workbench
AlphaFold monomer V2.0 prediction for selina-4(15),7(11)-diene synthase ((2E,6E)-farnesyl diphosphate cyclizing) (B5HDJ6)
Analyse AlphaFold monomer V2.0 prediction for selina-4(15),7(11)-diene synthase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B5HDJ6
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9073C46348542FfE4327c3F363F9B51B22058e75
- Molecule
- Selina-4(15),7(11)-diene synthase ((2E,6E)-farnesyl diphosphate cyclizing)
- UniProt
- B5HDJ6
- Pockets
- 3 · best druggability 0.76
Structure
1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Selina-4(15),7(11)-diene synthase ((2E,6E)-farnesyl diphosphate cyclizing) | protein | 365 | 66% helix, 2% strand | B5HDJ6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 376 | 0.76 | 0.86 | 51 | empty |
| 2 | 187 | 0.60 | 0.82 | 19 | empty |
| 3 | 75 | 0.42 | 0.80 | 16 | empty |
Compared structures
- 4OKZ · Selinadiene synthase in complex with dihydrofarnesyl pyrophosphate · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 4OKZ · Selinadiene Synthase in complex with dihydrofarnesyl pyrophosphate · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 4OKM · Selinadiene synthase apo and in complex with diphosphate · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 4OKM · Selinadiene Synthase apo and in complex with diphosphate · an experimental structure of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5HDJ6
- Elsewhere: UniProt B5HDJ6 · AlphaFold DB B5HDJ6
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