Research workbench

AlphaFold monomer V2.0 prediction for copii coat assembly protein SEC16 (P48415)

Analyse AlphaFold monomer V2.0 prediction for copii coat assembly protein SEC16 (P48415) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P48415
Type: protein
Length: 2,195 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x6164D6eD35868169D8366C56A5C3F4D4aFBfCC1C
Molecule: Copii coat assembly protein SEC16
UniProt: P48415
Pockets: 5 · best druggability 0.40

Structure

1 distinct chain · 13% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Copii coat assembly protein SEC16	protein	2195	13% helix, 1% strand	P48415

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.40	0.77	14	empty
2	77	0.33	0.75	16	empty
3	53	0.33	0.77	12	empty
4	56	0.28	0.74	15	empty
5	51	0.28	0.75	15	empty

Compared structures

3MZK · SEC13/SEC16 complex, S.CEREVISIAE · an experimental structure of the same protein · chain A against B, TM-score 0.17
3MZK · Sec13/Sec16 complex, S.cerevisiae · an experimental structure of the same protein · chain A against B, TM-score 0.17

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48415
Elsewhere: UniProt P48415 · AlphaFold DB P48415

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