Research workbench
AlphaFold monomer V2.0 prediction for protein SDA1 homolog (Q9NVU7)
Analyse AlphaFold monomer V2.0 prediction for protein SDA1 homolog (Q9NVU7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9NVU7
- Type
- protein
- Length
- 687 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- Protein SDA1 homolog
- UniProt
- Q9NVU7
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SDA1 homolog | protein | 687 | 62% helix, 0% strand | Q9NVU7 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 977 | 0.75 | 0.78 | 74 | empty |
| 2 | 342 | 0.57 | 0.76 | 51 | empty |
| 3 | 148 | 0.57 | 0.82 | 22 | empty |
| 4 | 265 | 0.51 | 0.75 | 24 | empty |
| 5 | 137 | 0.40 | 0.74 | 20 | empty |
Compared structures
- 8IDY · human nuclear pre-60S ribosomal particle - State F · an experimental structure of the same protein · chain A against u, TM-score 0.68
- 8INF · human nuclear pre-60S ribosomal particle - State F' · an experimental structure of the same protein · chain A against f, TM-score 0.68
- 8FL2 · Human nuclear pre-60S ribosomal subunit (State I1) · an experimental structure of the same protein · chain A against NT, TM-score 0.68
- 8FL4 · Human nuclear pre-60S ribosomal subunit (State I3) · an experimental structure of the same protein · chain A against NT, TM-score 0.68
- 8FL3 · Human nuclear pre-60S ribosomal subunit (State I2) · an experimental structure of the same protein · chain A against NT, TM-score 0.68
- 8IPY · human nuclear pre-60S ribosomal particle - State D' · an experimental structure of the same protein · chain A against N, TM-score 0.46
- 8INK · human nuclear pre-60S ribosomal particle - State D · an experimental structure of the same protein · chain A against N, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NVU7
- Elsewhere: UniProt Q9NVU7 · AlphaFold DB Q9NVU7
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