Research workbench
AlphaFold monomer V2.0 prediction for sodium channel protein type 11 subunit alpha (O88457)
Analyse AlphaFold monomer V2.0 prediction for sodium channel protein type 11 subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O88457
- Type
- protein
- Length
- 1,765 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF8cD1d8d93E9783063700De244A6e3cf6A195579
- Molecule
- Sodium channel protein type 11 subunit alpha
- UniProt
- O88457
- Pockets
- 20 · best druggability 0.85
Structure
1 distinct chain · 61% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium channel protein type 11 subunit alpha | protein | 1765 | 61% helix, 3% strand | O88457 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 917 | 0.85 | 0.86 | 79 | empty |
| 2 | 1156 | 0.77 | 0.79 | 96 | empty |
| 3 | 1126 | 0.75 | 0.77 | 102 | empty |
| 4 | 582 | 0.70 | 0.79 | 58 | empty |
| 5 | 622 | 0.69 | 0.77 | 74 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O88457
- Elsewhere: UniProt O88457 · AlphaFold DB O88457
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