Research workbench
AlphaFold monomer V2.0 prediction for sodium channel protein type 9 subunit alpha (O08562)
Analyse AlphaFold monomer V2.0 prediction for sodium channel protein type 9 subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O08562
- Type
- protein
- Length
- 1,984 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDe890bb2abbE09972D957056877A482703a20f59
- Molecule
- Sodium channel protein type 9 subunit alpha
- UniProt
- O08562
- Pockets
- 20 · best druggability 0.86
Structure
1 distinct chain · 54% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium channel protein type 9 subunit alpha | protein | 1984 | 54% helix, 3% strand | O08562 |
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1089 | 0.86 | 0.87 | 88 | empty |
| 2 | 1116 | 0.76 | 0.78 | 92 | empty |
| 3 | 1189 | 0.72 | 0.76 | 104 | empty |
| 4 | 610 | 0.71 | 0.79 | 48 | empty |
| 5 | 51 | 0.68 | 0.96 | 16 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O08562
- Elsewhere: UniProt O08562 · AlphaFold DB O08562
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