Research workbench
AlphaFold monomer V2.0 prediction for sodium channel protein type 5 subunit alpha (Q9JJV9)
Analyse AlphaFold monomer V2.0 prediction for sodium channel protein type 5 subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9JJV9
- Type
- protein
- Length
- 2,019 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9377360E5534e0b32ED177Ed6f54ffBbf020C961
- Molecule
- Sodium channel protein type 5 subunit alpha
- UniProt
- Q9JJV9
- Pockets
- 20 · best druggability 0.84
Structure
1 distinct chain · 53% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium channel protein type 5 subunit alpha | protein | 2019 | 53% helix, 3% strand | Q9JJV9 |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1112 | 0.84 | 0.85 | 85 | empty |
| 2 | 1020 | 0.77 | 0.79 | 95 | empty |
| 3 | 1079 | 0.74 | 0.76 | 94 | empty |
| 4 | 525 | 0.70 | 0.79 | 48 | empty |
| 5 | 351 | 0.67 | 0.81 | 43 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JJV9
- Elsewhere: UniProt Q9JJV9 · AlphaFold DB Q9JJV9
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