Research workbench
AlphaFold monomer V2.0 prediction for sodium channel protein 1 brain (Q05973)
Analyse AlphaFold monomer V2.0 prediction for sodium channel protein 1 brain (Q05973) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q05973
- Type
- protein
- Length
- 1,522 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5dC362867B8F1D91BcF4e783Db45bC54097cA2a4
- Molecule
- Sodium channel protein 1 brain
- UniProt
- Q05973
- Pockets
- 20 · best druggability 0.82
Structure
1 distinct chain · 65% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium channel protein 1 brain | protein | 1522 | 65% helix, 4% strand | Q05973 |
Pockets
20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1191 | 0.82 | 0.83 | 111 | empty |
| 2 | 717 | 0.75 | 0.80 | 58 | empty |
| 3 | 1158 | 0.74 | 0.77 | 105 | empty |
| 4 | 528 | 0.71 | 0.79 | 61 | empty |
| 5 | 638 | 0.70 | 0.77 | 68 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05973
- Elsewhere: UniProt Q05973 · AlphaFold DB Q05973
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