Research workbench
AlphaFold monomer V2.0 prediction for nuclease sbccd subunit D (P0AG76)
Analyse AlphaFold monomer V2.0 prediction for nuclease sbccd subunit D (P0AG76) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AG76
- Type
- protein
- Length
- 400 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x126FAC61adfcCB9Aa6cE867C9C038cCe03399896
- Molecule
- Nuclease sbccd subunit D
- UniProt
- P0AG76
- Pockets
- 1 · best druggability 0.26
Structure
1 distinct chain · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclease sbccd subunit D | protein | 400 | 37% helix, 24% strand | P0AG76 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.26 | 0.74 | 18 | empty |
Compared structures
- 7YZO · Endonuclease state of the E. COLI MRE11-RAD50 (sbccd) head complex bound to ADP and dsdna · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 7YZO · Endonuclease state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and dsDNA · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 7Z03 · Endonuclease state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and… · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 7Z03 · Endonuclease state of the E. COLI MRE11-RAD50 (sbccd) head complex bound to ADP and… · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 7YZP · Hairpin-bound state of the E. COLI MRE11-RAD50 (sbccd) head complex bound to ADP and a… · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 7YZP · Hairpin-bound state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and a… · an experimental structure of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AG76
- Elsewhere: UniProt P0AG76 · AlphaFold DB P0AG76
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.