Research workbench
AlphaFold monomer V2.0 prediction for nuclease sbccd subunit C (P13458)
Analyse AlphaFold monomer V2.0 prediction for nuclease sbccd subunit C (P13458) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P13458
- Type
- protein
- Length
- 1,048 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa290d73B7A96341BDEd15630a89ebdADF7F8CE86
- Molecule
- Nuclease sbccd subunit C
- UniProt
- P13458
- Pockets
- 3 · best druggability 0.62
Structure
1 distinct chain · 69% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclease sbccd subunit C | protein | 1048 | 69% helix, 9% strand | P13458 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.62 | 0.91 | 17 | empty |
| 2 | 75 | 0.36 | 0.76 | 13 | empty |
| 3 | 75 | 0.33 | 0.74 | 14 | empty |
Compared structures
- 7Z03 · Endonuclease state of the E. COLI MRE11-RAD50 (sbccd) head complex bound to ADP and… · an experimental structure of the same protein · chain A against D, TM-score 0.33
- 7Z03 · Endonuclease state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and… · an experimental structure of the same protein · chain A against D, TM-score 0.33
- 7YZO · Endonuclease state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and dsDNA · an experimental structure of the same protein · chain A against D, TM-score 0.33
- 7YZO · Endonuclease state of the E. COLI MRE11-RAD50 (sbccd) head complex bound to ADP and dsdna · an experimental structure of the same protein · chain A against D, TM-score 0.33
- 7YZP · Hairpin-bound state of the E. COLI MRE11-RAD50 (sbccd) head complex bound to ADP and a… · an experimental structure of the same protein · chain A against D, TM-score 0.33
- 7YZP · Hairpin-bound state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and a… · an experimental structure of the same protein · chain A against D, TM-score 0.33
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13458
- Elsewhere: UniProt P13458 · AlphaFold DB P13458
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