Research workbench
AlphaFold monomer V2.0 prediction for peptide transport periplasmic protein sapa (P45285)
Analyse AlphaFold monomer V2.0 prediction for peptide transport periplasmic protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P45285
- Type
- protein
- Length
- 565 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3aFd2E734A81A7F74B5E57D5823327c30169f279
- Molecule
- Peptide transport periplasmic protein sapa
- UniProt
- P45285
- Pockets
- 7 · best druggability 0.74
Structure
1 distinct chain · 34% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide transport periplasmic protein sapa | protein | 565 | 34% helix, 22% strand | P45285 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 468 | 0.74 | 0.83 | 62 | empty |
| 2 | 225 | 0.68 | 0.85 | 35 | empty |
| 3 | 324 | 0.63 | 0.79 | 39 | empty |
| 4 | 98 | 0.45 | 0.79 | 22 | empty |
| 5 | 59 | 0.41 | 0.82 | 19 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45285
- Elsewhere: UniProt P45285 · AlphaFold DB P45285
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