Research workbench
AlphaFold monomer V2.0 prediction for sperm acrosome membrane- associated protein 3 (Q9D9X8)
Analyse AlphaFold monomer V2.0 prediction for sperm acrosome membrane- associated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9D9X8
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF3b04d65F1aD0058771B149FB8BD62b3934a8918
- Molecule
- Sperm acrosome membrane-associated protein 3
- UniProt
- Q9D9X8
- Pockets
- 2 · best druggability 0.48
Structure
1 distinct chain · 42% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sperm acrosome membrane-associated protein 3 | protein | 221 | 42% helix, 5% strand | Q9D9X8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.48 | 0.74 | 22 | empty |
| 2 | 67 | 0.29 | 0.73 | 13 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 4YF2 · Crystal structure of mouse sperm C-type lysozyme-like protein 1 · an experimental structure of the same protein · chain A against A, TM-score 0.57
- 4YF2 · Crystal structure of mouse sperm C-type lysozyme-like protein 1 · an experimental structure of the same protein · chain A against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9D9X8
- Elsewhere: UniProt Q9D9X8 · AlphaFold DB Q9D9X8
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