Research workbench
AlphaFold monomer V2.0 prediction for holliday junction ATP-dependent DNA helicase ruva (Q9F1Q3)
Analyse AlphaFold monomer V2.0 prediction for holliday junction ATP-dependent DNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9F1Q3
- Type
- protein
- Length
- 191 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC29de81a61aaA258d315f09cc8A868dd942DA167
- Molecule
- Holliday junction ATP-dependent DNA helicase ruva
- UniProt
- Q9F1Q3
- Pockets
- 2 · best druggability 0.45
Structure
1 distinct chain · 49% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Holliday junction ATP-dependent DNA helicase ruva | protein | 191 | 49% helix, 21% strand | Q9F1Q3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.45 | 0.76 | 23 | empty |
| 2 | 67 | 0.33 | 0.75 | 11 | empty |
Compared structures
- 1IXR · Ruva-ruvb complex · an experimental structure of the same protein · chain A against B, TM-score 0.71
- 1IXR · RuvA-RuvB complex · an experimental structure of the same protein · chain A against B, TM-score 0.71
- 8GH8 · RuvA Holliday junction DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.54
- 1IXS · Structure of RuvB complexed with RuvA domain III · an experimental structure of the same protein · chain A against A, TM-score 0.26
- 1IXS · Structure of ruvb complexed with ruva domain III · an experimental structure of the same protein · chain A against A, TM-score 0.26
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9F1Q3
- Elsewhere: UniProt Q9F1Q3 · AlphaFold DB Q9F1Q3
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