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AlphaFold monomer V2.0 prediction for ubiquitin-NEDD8-like protein RUB1 (Q9SHE7)

Analyse AlphaFold monomer V2.0 prediction for ubiquitin-NEDD8-like protein RUB1 (Q9SHE7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9SHE7
Type: protein
Length: 156 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xf87a97E0A4bB354D834857B14296240B167cbe70
Molecule: Ubiquitin-NEDD8-like protein RUB1
UniProt: Q9SHE7
Pockets: 1 · best druggability 0.39

Structure

1 distinct chain · 21% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin-NEDD8-like protein RUB1	protein	156	21% helix, 35% strand	Q9SHE7

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	107	0.39	0.75	18	empty

Compared structures

1BT0 · Structure of ubiquitin-like protein, RUB1 · an experimental structure of the same protein · chain A against A, TM-score 0.46
1BT0 · Structure of ubiquitin-like protein, RUB1 · an experimental structure of the same protein · chain A against A, TM-score 0.46

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9SHE7
Elsewhere: UniProt Q9SHE7 · AlphaFold DB Q9SHE7

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