Research workbench
AlphaFold monomer V2.0 prediction for 37S ribosomal protein S25, mitochondrial (P40496)
Analyse AlphaFold monomer V2.0 prediction for 37S ribosomal protein S25, mitochondrial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P40496
- Type
- protein
- Length
- 264 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x71112d4fF7ebb3b617963c05f052289e073082FD
- Molecule
- 37S ribosomal protein S25, mitochondrial
- UniProt
- P40496
- Pockets
- 2 · best druggability 0.36
Structure
1 distinct chain · 47% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 37S ribosomal protein S25, mitochondrial | protein | 264 | 47% helix, 2% strand | P40496 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.36 | 0.75 | 23 | empty |
| 2 | 64 | 0.27 | 0.73 | 15 | empty |
Compared structures
- 8OM4 · Small subunit of yeast mitochondrial ribosome. · an experimental structure of the same protein · chain A against U, TM-score 0.88
- 8OM3 · Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23. · an experimental structure of the same protein · chain A against U, TM-score 0.88
- 8OM2 · Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22. · an experimental structure of the same protein · chain A against U, TM-score 0.88
- 5MRE · Structure of the yeast mitochondrial ribosome - Class B · an experimental structure of the same protein · chain A against UU, TM-score 0.87
- 5MRF · Structure of the yeast mitochondrial ribosome - Class C · an experimental structure of the same protein · chain A against UU, TM-score 0.87
- 5MRC · Structure of the yeast mitochondrial ribosome - Class A · an experimental structure of the same protein · chain A against UU, TM-score 0.87
- 8D8L · Yeast mitochondrial small subunit assembly intermediate (State 3) · an experimental structure of the same protein · chain A against U, TM-score 0.87
- 8D8K · Yeast mitochondrial small subunit assembly intermediate (State 2) · an experimental structure of the same protein · chain A against U, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40496
- Elsewhere: UniProt P40496 · AlphaFold DB P40496
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