Research workbench
AlphaFold monomer V2.0 prediction for 37S ribosomal protein S5, mitochondrial (P33759)
Analyse AlphaFold monomer V2.0 prediction for 37S ribosomal protein S5, mitochondrial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P33759
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- 37S ribosomal protein S5, mitochondrial
- UniProt
- P33759
- Pockets
- 2 · best druggability 0.31
Structure
1 distinct chain · 30% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 37S ribosomal protein S5, mitochondrial | protein | 307 | 30% helix, 20% strand | P33759 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.31 | 0.76 | 16 | empty |
| 2 | 53 | 0.27 | 0.73 | 9 | empty |
Compared structures
- 5MRF · Structure of the yeast mitochondrial ribosome - Class C · an experimental structure of the same protein · chain A against EE, TM-score 0.91
- 5MRC · Structure of the yeast mitochondrial ribosome - Class A · an experimental structure of the same protein · chain A against EE, TM-score 0.91
- 8OM3 · Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23. · an experimental structure of the same protein · chain A against E, TM-score 0.90
- 8OM4 · Small subunit of yeast mitochondrial ribosome. · an experimental structure of the same protein · chain A against E, TM-score 0.87
- 8D8L · Yeast mitochondrial small subunit assembly intermediate (State 3) · an experimental structure of the same protein · chain A against E, TM-score 0.86
- 5MRE · Structure of the yeast mitochondrial ribosome - Class B · an experimental structure of the same protein · chain A against EE, TM-score 0.85
- 8OM2 · Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22. · an experimental structure of the same protein · chain A against E, TM-score 0.85
- 8D8K · Yeast mitochondrial small subunit assembly intermediate (State 2) · an experimental structure of the same protein · chain A against E, TM-score 0.81
- 8D8J · Yeast mitochondrial small subunit assembly intermediate (State 1) · an experimental structure of the same protein · chain A against E, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33759
- Elsewhere: UniProt P33759 · AlphaFold DB P33759
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