Research workbench
AlphaFold monomer V2.0 prediction for ribosomal protein S3, mitochondrial (Q95749)
Analyse AlphaFold monomer V2.0 prediction for ribosomal protein S3, mitochondrial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q95749
- Type
- protein
- Length
- 556 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xccE07Bb1cCcAb5FcC2f1c06b35F43BCa615b5bC8
- Molecule
- Ribosomal protein S3, mitochondrial
- UniProt
- Q95749
- Pockets
- 8 · best druggability 0.66
Structure
1 distinct chain · 30% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal protein S3, mitochondrial | protein | 556 | 30% helix, 13% strand | Q95749 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 627 | 0.66 | 0.75 | 54 | empty |
| 2 | 504 | 0.65 | 0.77 | 42 | empty |
| 3 | 167 | 0.56 | 0.80 | 22 | empty |
| 4 | 272 | 0.53 | 0.75 | 28 | empty |
| 5 | 187 | 0.50 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6XYW · Structure of the plant mitochondrial ribosome · an experimental structure of the same protein · chain A against Bb, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95749
- Elsewhere: UniProt Q95749 · AlphaFold DB Q95749
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