Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase J (B6J489)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B6J489
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xD0cfbEc245A8BAC2A6eE43DE22b2C650C2c695B5
- Molecule
- Ribosomal RNA small subunit methyltransferase J
- UniProt
- B6J489
- Pockets
- 4 · best druggability 0.71
Structure
1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase J | protein | 254 | 33% helix, 23% strand | B6J489 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 584 | 0.71 | 0.79 | 66 | empty |
| 2 | 67 | 0.34 | 0.76 | 11 | empty |
| 3 | 52 | 0.32 | 0.77 | 13 | empty |
| 4 | 56 | 0.28 | 0.73 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6J489
- Elsewhere: UniProt B6J489 · AlphaFold DB B6J489
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