Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase F (Q8EDY2)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8EDY2
- Type
- protein
- Length
- 474 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9E40D5Ff2B2C3Aa13a3053E7Ff044C0F696c1e58
- Molecule
- Ribosomal RNA small subunit methyltransferase F
- UniProt
- Q8EDY2
- Pockets
- 6 · best druggability 0.58
Structure
1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase F | protein | 474 | 34% helix, 25% strand | Q8EDY2 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.58 | 0.79 | 31 | empty |
| 2 | 245 | 0.54 | 0.77 | 40 | empty |
| 3 | 158 | 0.48 | 0.77 | 32 | empty |
| 4 | 70 | 0.40 | 0.79 | 18 | empty |
| 5 | 55 | 0.36 | 0.79 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EDY2
- Elsewhere: UniProt Q8EDY2 · AlphaFold DB Q8EDY2
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