Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase B (P36929)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P36929
- Type
- protein
- Length
- 429 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1991a6b734E5275233F4E0c675B7e48254988D57
- Molecule
- Ribosomal RNA small subunit methyltransferase B
- UniProt
- P36929
- Pockets
- 2 · best druggability 0.71
Structure
1 distinct chain · 51% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase B | protein | 429 | 51% helix, 15% strand | P36929 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 912 | 0.71 | 0.76 | 71 | empty |
| 2 | 68 | 0.31 | 0.74 | 16 | empty |
Compared structures
- 1SQF · The crystal structure of E. COLI fmu binary complex with S- adenosylmethionine at 2.1 a… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1SQF · The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1SQG · The crystal structure of the E. coli Fmu apoenzyme at 1.65 A resolution · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1SQG · The crystal structure of the E. COLI fmu apoenzyme at 1.65 a resolution · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36929
- Elsewhere: UniProt P36929 · AlphaFold DB P36929
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