Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase a (Q5SM60)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5SM60
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd91633319BDB0a92cbC4f08DeA734Bf74C030064
- Molecule
- Ribosomal RNA small subunit methyltransferase a
- UniProt
- Q5SM60
- Pockets
- 2 · best druggability 0.77
Structure
1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase a | protein | 271 | 44% helix, 18% strand | Q5SM60 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.77 | 0.96 | 35 | empty |
| 2 | 51 | 0.30 | 0.76 | 12 | empty |
Compared structures
- 3FUX · T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (ksga) in complex with… · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 3FUX · T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with… · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 3FUW · T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3FUW · T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (ksga) in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3FUU · T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3FUU · T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (ksga) in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3FUT · Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (ksga) in space… · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 3FUT · Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space… · an experimental structure of the same protein · chain A against B, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SM60
- Elsewhere: UniProt Q5SM60 · AlphaFold DB Q5SM60
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