Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase a (Q6D0E0)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6D0E0
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7012c0b45c68a2c067644b9d3e5DDa06892c6957
- Molecule
- Ribosomal RNA small subunit methyltransferase a
- UniProt
- Q6D0E0
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase a | protein | 272 | 40% helix, 20% strand | Q6D0E0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.75 | 0.92 | 35 | empty |
| 2 | 71 | 0.32 | 0.75 | 14 | empty |
| 3 | 51 | 0.26 | 0.73 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6D0E0
- Elsewhere: UniProt Q6D0E0 · AlphaFold DB Q6D0E0
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