Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase a (Q83AC2)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q83AC2
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x751f1ee87e6151dBB6f0448fC97D7b0e5D7567cA
- Molecule
- Ribosomal RNA small subunit methyltransferase a
- UniProt
- Q83AC2
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase a | protein | 258 | 40% helix, 20% strand | Q83AC2 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.75 | 0.89 | 44 | empty |
| 2 | 54 | 0.42 | 0.82 | 11 | empty |
| 3 | 50 | 0.27 | 0.74 | 11 | empty |
Compared structures
- 3TQS · Structure of the dimethyladenosine transferase (ksgA) from Coxiella burnetii · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3TQS · Structure of the dimethyladenosine transferase (ksga) from coxiella burnetii · an experimental structure of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83AC2
- Elsewhere: UniProt Q83AC2 · AlphaFold DB Q83AC2
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