Research workbench
AlphaFold monomer V2.0 prediction for 30S ribosomal protein S9 (P39468)
Analyse AlphaFold monomer V2.0 prediction for 30S ribosomal protein S9 (P39468) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P39468
- Type
- protein
- Length
- 138 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x97EfFf2d74994e28D3b69b1503Bd9c292B2Df480
- Molecule
- 30S ribosomal protein S9
- UniProt
- P39468
- Pockets
- 1 · best druggability 0.32
Structure
1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S9 | protein | 138 | 40% helix, 21% strand | P39468 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.32 | 0.76 | 14 | empty |
Compared structures
- 8HL3 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.94
- 8HKX · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.93
- 8HL4 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.93
- 8HL1 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.92
- 8HL5 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.91
- 8HL2 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.90
- 8HKZ · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.85
- 8HKY · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AS9P, TM-score 0.85
- 8WQ2 · Structural basis of translation inhibition by a valine tRNA-derived fragment · an experimental structure of the same protein · chain A against AS9P, TM-score 0.83
- 8WKP · Structural basis of translation inhibition by a valine tRNA-derived fragment · an experimental structure of the same protein · chain A against AS9P, TM-score 0.73
- 8WQ4 · Structural basis of translation inhibition by a valine tRNA-derived fragment · an experimental structure of the same protein · chain A against AS9P, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39468
- Elsewhere: UniProt P39468 · AlphaFold DB P39468
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