Research workbench

AlphaFold monomer V2.0 prediction for 40S ribosomal protein S8 (P62242)

Analyse AlphaFold monomer V2.0 prediction for 40S ribosomal protein S8 (P62242) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P62242
Type: protein
Length: 208 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xb3c0C983Fc44934AC589D7131C08a72544EBB92E
Molecule: 40S ribosomal protein S8
UniProt: P62242
Pockets: 2 · best druggability 0.41

Structure

1 distinct chain · 33% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	40S ribosomal protein S8	protein	208	33% helix, 25% strand	P62242

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	142	0.41	0.74	27	empty
2	53	0.30	0.75	13	empty

Compared structures

7LS2 · 80S ribosome from mouse bound to eEF2 (Class I) · an experimental structure of the same protein · chain A against u, TM-score 0.95
7LS1 · 80S ribosome from mouse bound to eEF2 (Class II) · an experimental structure of the same protein · chain A against u, TM-score 0.95
7CPV · Cryo-EM structure of 80S ribosome from mouse testis · an experimental structure of the same protein · chain A against SI, TM-score 0.85
7CPU · Cryo-EM structure of 80S ribosome from mouse kidney · an experimental structure of the same protein · chain A against SI, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62242
Elsewhere: UniProt P62242 · AlphaFold DB P62242

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