Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q8P4H2)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q8P4H2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8P4H2
- Type
- protein
- Length
- 624 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1e98BA8F2a6e99CF52e657421c066AE47B314812
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q8P4H2
- Pockets
- 5 · best druggability 0.74
Structure
1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 624 | 66% helix, 2% strand | Q8P4H2 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 654 | 0.74 | 0.80 | 54 | empty |
| 2 | 402 | 0.63 | 0.78 | 41 | empty |
| 3 | 136 | 0.43 | 0.76 | 27 | empty |
| 4 | 104 | 0.39 | 0.75 | 16 | empty |
| 5 | 76 | 0.34 | 0.75 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8P4H2
- Elsewhere: UniProt Q8P4H2 · AlphaFold DB Q8P4H2
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