Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (O83506)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (O83506) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O83506
- Type
- protein
- Length
- 611 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x04Abc94644f002885c8999456744b144a9092D1d
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- O83506
- Pockets
- 7 · best druggability 0.56
Structure
1 distinct chain · 69% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 611 | 69% helix, 1% strand | O83506 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 323 | 0.56 | 0.76 | 27 | empty |
| 2 | 176 | 0.49 | 0.77 | 22 | empty |
| 3 | 182 | 0.45 | 0.74 | 22 | empty |
| 4 | 83 | 0.38 | 0.76 | 14 | empty |
| 5 | 62 | 0.29 | 0.74 | 11 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O83506
- Elsewhere: UniProt O83506 · AlphaFold DB O83506
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