Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (O24744)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (O24744) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O24744
- Type
- protein
- Length
- 614 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa86d02c20e9C08E0A9e5222b2F3C609cd0C0DC53
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- O24744
- Pockets
- 6 · best druggability 0.69
Structure
1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 614 | 66% helix, 2% strand | O24744 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.69 | 0.95 | 18 | empty |
| 2 | 392 | 0.60 | 0.76 | 45 | empty |
| 3 | 247 | 0.53 | 0.76 | 40 | empty |
| 4 | 76 | 0.40 | 0.78 | 17 | empty |
| 5 | 108 | 0.38 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O24744
- Elsewhere: UniProt O24744 · AlphaFold DB O24744
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