Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P0A2E3)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P0A2E3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0A2E3
- Type
- protein
- Length
- 615 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5Ed6BFcdacb6badB27582f1166F4aAdB839FC5D7
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P0A2E3
- Pockets
- 8 · best druggability 0.65
Structure
1 distinct chain · 65% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 615 | 65% helix, 2% strand | P0A2E3 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 396 | 0.65 | 0.79 | 51 | empty |
| 2 | 249 | 0.57 | 0.78 | 35 | empty |
| 3 | 167 | 0.56 | 0.81 | 26 | empty |
| 4 | 76 | 0.43 | 0.80 | 18 | empty |
| 5 | 85 | 0.41 | 0.78 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A2E3
- Elsewhere: UniProt P0A2E3 · AlphaFold DB P0A2E3
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