Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P33451)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P33451) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P33451
- Type
- protein
- Length
- 635 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P33451
- Pockets
- 6 · best druggability 0.74
Structure
1 distinct chain · 66% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 635 | 66% helix, 1% strand | P33451 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 806 | 0.74 | 0.79 | 62 | empty |
| 2 | 108 | 0.52 | 0.82 | 15 | empty |
| 3 | 235 | 0.51 | 0.75 | 27 | empty |
| 4 | 73 | 0.34 | 0.75 | 16 | empty |
| 5 | 82 | 0.33 | 0.73 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33451
- Elsewhere: UniProt P33451 · AlphaFold DB P33451
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