Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q4UJT1)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q4UJT1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q4UJT1
- Type
- protein
- Length
- 635 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5881B09f2D8e743400698633641fc1cD2Ed2BE6F
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q4UJT1
- Pockets
- 7 · best druggability 0.74
Structure
1 distinct chain · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 635 | 64% helix, 1% strand | Q4UJT1 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 762 | 0.74 | 0.79 | 69 | empty |
| 2 | 298 | 0.53 | 0.74 | 32 | empty |
| 3 | 121 | 0.52 | 0.81 | 19 | empty |
| 4 | 146 | 0.45 | 0.76 | 14 | empty |
| 5 | 83 | 0.44 | 0.80 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4UJT1
- Elsewhere: UniProt Q4UJT1 · AlphaFold DB Q4UJT1
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