Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q1RKH7)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q1RKH7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q1RKH7
- Type
- protein
- Length
- 641 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8EFA7f4a75DF32D98Cf4d88EFEdA11ea5e52c27D
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q1RKH7
- Pockets
- 6 · best druggability 0.75
Structure
1 distinct chain · 65% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 641 | 65% helix, 2% strand | Q1RKH7 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 839 | 0.75 | 0.79 | 67 | empty |
| 2 | 473 | 0.62 | 0.76 | 41 | empty |
| 3 | 166 | 0.56 | 0.81 | 24 | empty |
| 4 | 65 | 0.34 | 0.76 | 12 | empty |
| 5 | 72 | 0.30 | 0.73 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RKH7
- Elsewhere: UniProt Q1RKH7 · AlphaFold DB Q1RKH7
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