Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P0CZ15)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P0CZ15) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0CZ15
- Type
- protein
- Length
- 674 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x77ff9F5FE96bfF71D9917d1E205819107Ca1f53E
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P0CZ15
- Pockets
- 6 · best druggability 0.75
Structure
1 distinct chain · 64% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 674 | 64% helix, 2% strand | P0CZ15 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 486 | 0.75 | 0.83 | 59 | empty |
| 2 | 435 | 0.69 | 0.80 | 42 | empty |
| 3 | 124 | 0.39 | 0.74 | 14 | empty |
| 4 | 55 | 0.39 | 0.80 | 11 | empty |
| 5 | 89 | 0.38 | 0.75 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CZ15
- Elsewhere: UniProt P0CZ15 · AlphaFold DB P0CZ15
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