Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q59753)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q59753) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q59753
- Type
- protein
- Length
- 684 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa6D533dDeEB1DAde828e7Cc2ca20af4B56132a5C
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q59753
- Pockets
- 5 · best druggability 0.77
Structure
1 distinct chain · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 684 | 64% helix, 1% strand | Q59753 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1059 | 0.77 | 0.79 | 98 | empty |
| 2 | 171 | 0.49 | 0.77 | 26 | empty |
| 3 | 103 | 0.37 | 0.75 | 21 | empty |
| 4 | 79 | 0.36 | 0.75 | 15 | empty |
| 5 | 56 | 0.28 | 0.74 | 11 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59753
- Elsewhere: UniProt Q59753 · AlphaFold DB Q59753
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